Beginner’s Guide to Seed Starting: How to Start Seeds

In this comprehensive guide to seed starting, we’ll cover everything you need to know—from supplies to troubleshooting—to set you up for gardening success!

Starting seeds is one of the most rewarding steps in creating a thriving garden.

Whether you’re cultivating a vibrant vegetable garden or growing annual flowers for your landscape, seed starting allows you to grow healthy plants from scratch, with exactly the types and varieties that you need.

A pepper seedling growing in a small pot after being started from seed indoors.

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What is Seed Starting?

Seed starting is the process of germinating seeds indoors, to give plants a head start, before transplanting them outdoors into your garden. This method is particularly beneficial in areas with shorter growing seasons, as it extends the time plants have to grow and produce.

I’m gardening in zone 6b, and our growing season lasts from mid May to the beginning of October. Starting my seeds indoors gives me more time for succession planting things like broccoli, as well as plants like tomatoes that take longer to get growing.

By starting seeds indoors, you also have greater control over the germination process, soil temperature, and growing conditions, which can lead to healthier plants and better yields. I also tend to have better success and care for my seedlings because of how close my plants are to me when they are growing indoors!

What You’ll Need for Seed Starting

Before you begin, there are some tools and equipment that will make the task much easier. Keep in mind that many of these things are an investment that you can use year after year after purchasing them.

Some of these tools are quite vital, like your seed packets and growing medium, but others are not necessary to get started: like a heat mat or soil thermometer.

Most Important Supplies for Seed Starting

Seed Packets

Three packs of flower seeds being held in front of a prepared tray of seed starting mix ready to be planted.

When choosing the seeds you’d like to grow for your garden, consider what you will actually want to use once they grow!

For example, my family isn’t a fan of kale or eggplant…at all. I’ve grown some of the most beautiful kale I’ve ever seen, however, it became a labor of love for my chickens rather than my children. Fortunately for me, my egg layers love kale, but I grow much less of it now that I know we won’t use it in our kitchen.

It’s also important to note the difference between hybrid seeds and heirloom seeds.

Hybrid seeds are grown through a controlled pollination process and often won’t reproduce a reliable result if the seeds are saved from your garden. If you want to have a sustainable seed saving process, these might not be for you.

However, hybrid seeds are also often bred for vitality and vigor. So if you aren’t worried about seed saving, these can produce extremely hearty plants!

Heirloom seeds are open-pollinated and are classified as “heirloom” after growing for 50 successive generations. Because of their long lineage, their seeds can be saved at home and grown for your own future garden generations!

I personally use heirloom seeds. I love the romantic stories that often surround the different varieties and seed saving at the end of the season saves me tons of money every year.

It is also important to read the information on the seeds you are interested in purchasing. Some varieties do better in specific regions.

Your seed packet should also tell you the planting information for each individual seed.

Some seeds need to be planted extremely shallow, and will note that on the packet, while others will need to be planted 1/2″ or more below the surface of the soil.

Seed-Starting Mix

A growing medium, which can be called a seed-starting mix, is also vital for growing you seeds! In fact, it’s just as important as the seeds themselves.

Official seed starting mix is a soilless mix designed to retain moisture and provide good drainage. However, it it is also often sterile, to prevent diseases being introduced to your seedlings. This is a good thing for keeping things clean, but it also means it doesn’t provide nutrients to your seedlings once they germinate.

I prefer to use a run-of-the-mill organic garden soil from my local hardware or garden store. Don’t over think this step. Anything with perlite (those small white, styrofoam-like-beads) inside will regulate moisture fine for your young plants.

The only downfall to a large bag of garden mix is that it is often not sifted as well as a bag of seed starting mix.

To fix that, I simply remove any large pieces of bark or twigs from my mix as I come across it. It’s not much of a hassle at all.

Seed tray or cell trays

A seed starting tray with prepared soil for starting seeds indoors.

The next thing you need are containers to hold your seedlings and your soil. Plug trays and individual cells work best for small seeds.

Keep in mind that when your seedlings reach capacity in those trays, they will need to be potted up, or transplanted, into containers with a bit more space.

My favorite containers are these cell trays from Bootstrap Farmer. These containers aren’t the type to fall apart on you after one season of use, either. I’ve had mine since 2019 (past the 5 year mark) and they are still in use!

Many of my plants get started in these, and do not need to be up-potted before going out to the garden either. I find they are small enough for starting seeds gently, and yet large enough that many of my plants can grow to garden size in the same pot.

Grow Lights

Grow Light or Fluorescent Lights are needed to provide enough light for seedlings to grow strong and healthy. The most important thing to know when choosing a grow light is if they have the following key features:

  • Lumens: a light intensity of ideally 2,000-5,000 lumens for seed starting to support healthy growth.
  • Kelvins: opt for a full-spectrum light to mimic natural sunlight. Light labeled as “daylight” or with a color temperature of 5,000-6,500 Kelvin works best.
  • LEDs: many DIY and cheap instructions for seed starting will give fluorescent lights as an option, however LED lights will not get as hot or use as much energy as fluorescent lights can. If you already have the fluorescent lights, or only have the budget for those right now, those will work, but consider investing in the LED’s when you can.

The lights I use are these 4 ft LED’s that I can put on the undersides of my shelves.

Small fan

You might be surprised, but a small fan is actually a tool I didn’t know I was missing out on until I got one.

Picture this, I spend 12 weeks tending to and cultivating my vegetable seedlings, protecting them from pests and diseases, and eventually my chickens when I begin to transfer them outside… only for them to snap at the stem from a light breeze!

The unfortunate reality is that this can happen if your seedlings aren’t exposed to enough resistance during their beginning stages.

If you grow your seedlings indoors, they won’t be exposed to temperature fluctuations, bright days vs cloudy days, or any air circulation to strengthen their stems.

Adding a fan promotes good air circulation and prevents fungal diseases, as well as strengthens the stems.

Labels

To track what you’ve planted and when. Popsicle sticks or something like these work well as labels.

Less Important Supplies for Seed Starting

These supplies will only streamline and make your seed starting journey easier.

However I know as well as anyone that this endeavor can feel as daunting as it does expensive when starting out, so I didn’t start with these supplies, but only added some in later.

Light Timers

Adding timers to your lighting set up can make things much easier for you, the gardener. They are not necessary, but I find this to be the most helpful “non-essential” tool.

Seedlings need 12-16 hours per day of light to grow properly. It can be a hassle to turn your lights on and off at the exact same every day.

These are the timers I use to keep track of my seedlings’ light exposure.

Humidity Dome

Helps maintain high humidity during the germination process. Not necessary, but can help protect against temperature fluctuations.

You can also use plastic wrap to mimic a humidity dome if you want to experiment with adding humidity without adding more supplies to your list just yet.

Be sure to monitor seedlings closely when using a humidity dome, as constant moisture can promote diseases such as dampening off.

Spray Bottle

For gently watering seedlings. This is helpful for mostly just the seed stage.

Using a spray bottle helps to avoid disturbing the soil and the seed, but once the plants sprout, it’s better to water them directly at the soil, avoiding getting the entire plant wet.

heat mat

Ensures optimal soil temperature for seed germination. Again, this will greatly help you to control your plant’s environment, but is not necessary if you are growing your plants indoors in a temperature controlled area.

If you’re wanting to up your seed starting game, this is the heat mat I use in my set up.

SOIL THERMOMETER

Helps monitor soil temperature, a key factor in seed germination. This is one tool admittedly I still don’t use.

Most heat mats will come with a soil thermometer to regulate the mat’s temperature itself, and even still, not all of my seedlings will even fit on a heat mat.

My home is almost always in optimal range for growing plants, so I don’t worry much about keeping track of this.

Guide to Seed Starting: Step-by-Step Instructions

1. Plan Your Timeline

A seed starting and planting calendar for usda hardiness zone 6.

Start by determining your growing zone. You can input your zip code on the USDA map here.

  • “The USDA Plant Hardiness Zone Map is the standard by which gardeners and growers can determine which perennial plants are most likely to thrive at a location,” according to this USDA site.

You can also determine your first and last frost dates on the Farmer’s Almanac site here.

  • The frost date is the average date of the last light freeze in spring or the first light freeze in fall. Knowing this determines when you can start planting out your seedlings into the garden.

If you’re in zone 6 like me, I have a full seed starting and planting calendar that you can read about here!

Using the information of your last and first frost dates, you can calculate when to start seeds indoors based on the seed packet’s recommendations.

For example, tomato seeds are often started 6-8 weeks before the last frost date, while quicker germinating seeds like basil may only need 4 weeks. If your last frost date is the second week of May, you’d count back 6-8 weeks for tomatoes, or 4 weeks for basil and start your seeds then. Repeat this step for all of the plants you plan on starting!

2. Choose Your Seeds

Opt for fresh seeds with high germination rates. Vegetable seeds like tomato seeds, pepper seeds, and leafy greens are great for beginners. For flowers, consider annual flowers like marigolds or zinnias. Check the seed packet for specific growing requirements, like planting depth, and recommended start dates.

3. Prepare Your Seed-Starting Mix

Moisten the seed-starting mix with water until it’s damp but not soaked. I always think of a rung out dish rag. It isn’t dripping through your fingers while you hold it, but if you squeeze it, water will drip a bit.

You want to make sure you moisten the growing medium before you add the seeds, as dry soil can be hydrophobic, meaning it’s averse to water before being thoroughly wetted.

Fill your seed trays or individual containers with the mix, leaving about ½ inch of space at the top. Avoid using garden soil, as it may contain weed seeds and harmful bacteria. As stated in the “what you’ll need” section, I purchase a gardening mix from my local garden store.

4. Plant Your Seeds

Refer to the seed packet for planting depth. As a good rule of thumb for seeds without the information available, plant seeds at a depth twice their size. Cover small seeds lightly with soil and pat gently to ensure contact. Large seeds, such as squash or pumpkin seeds, will require slightly deeper planting.

5. Provide Heat and Humidity

If using a heat mat or humidity dome, prepare these tools for your seed trays. As stated in the “what you’ll need section, these tools aren’t necessary, but can be helpful if your growing area isn’t a controlled temperature.

The optimal temperature for seed germination is typically 65-75°F, so if your home maintains this temperature, you can definitely do without the heat mat and humidity dome!

A warm, moist environment speeds up the germination process for most seeds.

6. Ensure Proper Lighting

Pepper seedlings being grown under a grow light before being transplanted to a garden.

As soon as seedlings emerge from the soil, you’ll want to place them under a grow light or fluorescent light for 12-16 hours a day. You don’t want them to be exposed to light 24/7, as this doesn’t happen in their normal growing environment.

Using a timer for the lights is extremely helpful to keep things regulated. Check the “what you’ll need” section above for more information on those tools.

Ensure the light source is positioned a few inches above the seedlings to prevent leggy growth.

A south-facing window can also work in a pinch, but artificial light provides more consistent results.

7. Water Carefully

Use a spray bottle to keep the soil surface moist before germination, but not soggy.

Avoid overwatering, as wet soil can lead to fungal diseases like damping-off. Check the soil daily to ensure it is slightly damp for your seedlings.

I prefer to bottom water my plants. This means I fill the bottom tray of my seed starting set up with enough water for my seedlings to suck up through the drain holes. Bottom watering allows me to avoid getting my seedlings themselves damp.

I also like to let my soil to dry out a bit before watering them again. This takes about a week when the seedlings are small, and less time as they get larger and consume more water.

8. Thin Seedlings

Onion seedlings before being thinned out.

Once the seedlings sprout, keep an eye on how many you have in each cell.

Once the seedlings develop their first set of true leaves, you’ll want to thin them out so that there is only one seedling per cell.

Thin seedlings by snipping weaker plants at the soil line to give the strongest ones room to grow. Crowded seedlings can compete for light and nutrients, leading to weaker plants overall.

9. Transplant to Larger Containers

A tomato seedling growing in a pot after being started from seed indoors.

If the seedlings outgrow their trays, move them to larger pots filled with potting soil. Handle seedlings gently to avoid damaging the delicate stems and roots. This step allows the plants to develop stronger root systems before outdoor planting.

Plants like tomatoes will root out of their stems if planted more deeply, so you can strengthen them significantly if you bury them a bit deeper when you pot them up.

10. Harden Off Before Transplanting

Vegetable seedlings being hardened off outdoors before being planted into the garden.

Before planting your seedlings outdoors, harden them off by gradually introducing them to outdoor conditions over 7-10 days.

Start with a few hours of indirect sunlight and increase exposure daily. This step helps reduce transplant shock and prepares seedlings for their new environment.

I usually start with a partially shaded area that has low wind exposure, and work my way up with more light and wind exposure until it’s time to plant out.

Troubleshooting Common Seed Starting Issues

Even with careful planning, seed starting can come with challenges.

Let’s delve into some of the most common problems, why they occur, and step-by-step solutions to address them effectively.

  • Poor Germination: If your seeds aren’t sprouting, it’s often due to incorrect soil temperature or old seeds. Ensure the soil temperature matches the seed’s needs (use a soil thermometer to check). A heat mat can help maintain consistent warmth. Always use fresh seeds stored in a cool, dry place, and test older seeds’ viability by placing them on a damp paper towel to see if they germinate.
  • Leggy Seedlings: Seedlings become leggy when they stretch toward insufficient light or are exposed to high temperatures. To fix this:
    1. Improve Lighting: Position grow lights 2-3 inches above the plants and provide 12-16 hours of light daily. Adjust the light height as the seedlings grow.
    2. Transplant Deeply: Gently replant the seedlings into larger containers, burying part of the stem to stabilize the plant and encourage root growth along the buried stem. (note: this method only works for plants that can root out of their stems, so be sure to find out if your leggy seedlings fit in this category before burying any of the stem.)
    3. Cool the Environment: Lower the room temperature to 65-70°F. This slows elongation and promotes sturdier growth.
    4. Strengthen with Airflow: Place a small fan near the seedlings to simulate a breeze, which strengthens stems.
  • Damping-Off Disease: A fungal disease that causes seedlings to rot and collapse at the soil line. To prevent this:
    1. Avoid overwatering and ensure trays have proper drainage.
    2. Water seedlings from the bottom to keep foliage dry.
    3. Use sterile seed-starting mix and clean trays before use.
    4. Increase air circulation with a fan.
  • Yellowing Leaves: Yellow leaves often signal overwatering or nutrient deficiencies. Check for soggy soil and reduce watering if needed. If the seedlings have developed true leaves, consider feeding them with a diluted organic fertilizer, like this seaweed one that I use, to replenish nutrients. Be sure to follow the fertilization directions properly to avoid burning your plants with an over-concentrated fertilizer.
  • Stunted Growth: If seedlings seem stuck, it could be due to root-binding, insufficient light, or poor soil quality. To address this:
    1. Transplant seedlings into larger containers to give roots more space.
    2. Check light conditions and ensure 12-16 hours of bright light daily.
    3. Refresh the soil with a nutrient-rich potting mix or organic fertilizer.
  • Pest Problems: Tiny pests like fungus gnats or aphids can sometimes infest seedlings. Combat pests by:
    1. Sprinkling the soil surface with diatomaceous earth or sand to deter gnats.
    2. Using neem oil to treat aphids or mites.
    3. Keeping the growing area clean and free from decaying plant material.

Selecting the Best Seeds for Your Garden

When choosing seeds, consider your gardening goals:

  • For Early Spring Crops: Start cool-weather vegetables like lettuce and kale.
  • For Summer Bounty: Plant warm-season crops such as tomatoes, peppers, and cucumbers.
  • For Annual Flowers: Try marigolds, petunias, or cosmos for a splash of color.
  • For Herbs: Basil, parsley, and dill are easy to grow and useful in the kitchen.

Frequently Asked Questions About Seed Starting

When is the best time to start seeds indoors?

The best time to start seeds indoors depends on your hardiness zone and the plant’s growing season. Use the seed packet as a guide and consider your local frost dates to plan appropriately. Generally, early spring is a good time to start seeds indoors for summer planting.
If you’re in zone 6 like me, check out my seed starting calendar here.

Do I need a grow light to start my owns seeds?

Yes, providing enough light is crucial for healthy seedlings. Natural light from a sunny window can sometimes work, but for best results, especially in less sunny climates, use a grow light or fluorescent lights. These light sources mimic natural sunlight and provide the necessary intensity for strong growth.

Can I reuse seed trays for seed starting?

Yes, but it’s important to clean them thoroughly to avoid spreading fungal diseases or pests. Wash trays with warm soapy water and you can sanitize them with a solution of one part bleach to nine parts water. Rinse and allow them to dry completely before use.

What is the Ideal Soil Temperature for Germination?

Soil temperature varies by plant, but most seeds germinate well between 65-75°F. Use a soil thermometer to monitor this closely. For plants that prefer warmer conditions, like tomato seeds, a heat mat can help achieve the optimal temperature.

Why are my seedlings wilting?

Wilting seedlings can result from overwatering, poor drainage, or fungal diseases like damping-off. Ensure that your trays have proper drainage holes and avoid keeping the soil too wet. Using a fan to promote good air circulation can also help prevent these issues.

Can I start all seeds indoors?

Not all seeds thrive when started indoors. Root vegetables like carrots and sweet potatoes do better when sown directly into the garden, as they can be sensitive to transplanting. However, leafy greens, herbs, and annual flowers are excellent candidates for indoor seed starting.

What should I do if my seeds haven’t germinated?

If seeds fail to germinate, check the soil temperature and ensure it meets the seed’s needs. Inspect for excess moisture, as wet soil can cause seeds to rot. Using fresh seeds and testing germination on a damp paper towel before planting are also good practices.

What are the best seeds for beginners?

Easy-to-grow seeds like basil, marigolds, and lettuce are great for beginners. Vegetable seeds such as zucchini and beans germinate quickly and are forgiving to grow, making them ideal for new gardeners.

Seed starting is a rewarding way to take control of your garden, giving you a head start on the growing season. With the right supplies, a bit of patience, and this guide to seed starting, you’ll soon be enjoying the satisfaction of nurturing plants from seed to harvest!

Grab your seed packet and let’s grow!

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